Tag

Proteomics

All articles tagged with #proteomics

Dark Proteome Unveiled: 1,785 Tiny Proteins Emerge from Hidden Genome
science8 days ago

Dark Proteome Unveiled: 1,785 Tiny Proteins Emerge from Hidden Genome

An international study reveals that the human genome produces a large set of previously hidden tiny proteins, called peptideins, derived from non-canonical open reading frames. The team identified 1,785 microproteins across 95,520 experiments, expanding the known proteome and suggesting some peptideins may function like real proteins. Early findings include a peptidein linked to cancer survival, hinting at future therapeutic opportunities, though much remains to understand their roles. The work underscores that the dark genome is more biochemically active than previously thought and was published in Nature.

Seven-Day Fast Triggers Deep Molecular Changes After Day Three
science9 days ago

Seven-Day Fast Triggers Deep Molecular Changes After Day Three

A seven-day water-only fast drives broad molecular shifts that become most evident after about three days, including changes in hundreds of circulating proteins linked to the extracellular matrix and brain support, alongside a switch from glucose to fat and about 5.7 kg of weight loss. Refeeding largely reverses lean-tissue loss while fat loss persists. These findings could inform therapies that mimic fasting’s benefits for metabolism, aging, and neurological health, though prolonged fasting carries risks and should be medically supervised.

Proteome expanded by microproteins and a new peptidein category
biology20 days ago

Proteome expanded by microproteins and a new peptidein category

An international study standardizes evidence for thousands of non-canonical ORFs (ncORFs) and introduces the term peptidein for ncORF-encoded microproteins. Analyzing 7,264 ncORFs across 95,520 proteomics experiments, researchers find roughly 25% yield detectable peptides, and they develop an annotation framework using proteomics, immunopeptidomics, and Ribo-seq to classify ncORFs into protein or peptidein status. They also introduce ORBL and ORBLq to measure evolutionary constraint on ORFness, showing detected ncORFs often have higher constraint. The work identifies pan-essential ncORFs that meet criteria for potential protein-coding genes or peptideins and outlines a path to elevate ncORFs toward reference annotation, thereby broadening the recognized human proteome with implications for cancer biology and immunotherapy.

Dark proteins rebranded as peptideins to map hidden biology
science20 days ago

Dark proteins rebranded as peptideins to map hidden biology

Thousands of so-called dark proteins in the human genome have been reclassified as peptideins and added to major databases, but only 15 of 7,264 suspected sequences have robust experimental support; peptideins are short, often lack evolutionary relatives, and may be cellular by-products with unclear functions, though some are linked to diseases like childhood cancers. The effort aims to spur research into their roles and significance in biology.

Centenarians’ Blood Signatures Hint at Slower Aging
science1 month ago

Centenarians’ Blood Signatures Hint at Slower Aging

A Swiss study analyzing blood from centenarians (100–105) found 37 of 724 serum proteins resemble those of younger people, suggesting key aging mechanisms can slow rather than stop; centenarians show lower oxidative stress markers, more youthful extracellular-matrix proteins, and a metabolism that remains balanced, with lifestyle factors highlighted as a powerful longevity lever.

Turning Point at 50: New Proteomics Atlas Maps How Our Tissues Age
science2 months ago

Turning Point at 50: New Proteomics Atlas Maps How Our Tissues Age

A proteomics study of 516 samples from 76 organ donors aged 14–68 finds an aging inflection around age 50, with vascular tissues like the aorta aging fastest. The team built tissue-specific aging clocks across seven body systems, mapped organ aging trajectories, and identified disease-related protein changes that rise with age. Notably, most remodeling occurs between ages 45–55. In a mouse experiment, a protein linked to vascular aging induced declines in physical performance, underscoring the aorta and blood vessels as early aging targets. The work aims to create a comprehensive multi-tissue aging atlas to guide interventions for age-related diseases.

Proteins in Margins Reveal Renaissance DIY Medicine
science2 months ago

Proteins in Margins Reveal Renaissance DIY Medicine

Researchers combined multispectral imaging and proteomics to study two 1531 Renaissance medical manuals, uncovering faded text and protein traces from readers’ hands. The marginalia show extensive at‑home experimentation with vernacular remedies, including both common ingredients and exotic compounds like hippopotamus teeth; proteomics also detected immune-related proteins, illustrating how Renaissance knowledge blended practical tinkering with book knowledge. The work demonstrates a new way to contextualize historical recipes and could scale to more collections.

Aging Accelerates at 50 Across the Body, New Study Finds
health3 months ago

Aging Accelerates at 50 Across the Body, New Study Finds

A study analyzing 516 tissue samples from 76 organ donors aged 14–68 shows rapid aging begins around age 50, with different organs aging at different rates. The findings support aging as a systemic, nonuniform process and highlight the need for further research. In the meantime, NIH/CDC guidance emphasizes regular exercise, a nutrient-rich diet, portion control, and social engagement to maintain health and quality of life into later years.

Single-cell proteomics maps human liver zonation and its fragility in diseased tissue
science3 months ago

Single-cell proteomics maps human liver zonation and its fragility in diseased tissue

Researchers used advanced scDVP to profile hundreds of hepatocytes from 18 people, building a high-resolution map of protein gradients along the liver's porto–central axis. They quantified ~2,500 proteins per cell, showed roughly half are zonated, and introduced gradient-based analysis to quantify zonation without binning. Cross-species comparison with mice revealed shared and human-specific zonation features; in tissues with disrupted architecture, zonation is broadly lost. The study delivers an open-access liver proteome resource and a framework applicable to spatial proteomics.

Proteins from a 1531 medical text hint at Renaissance hair cures and odd remedies
science4 months ago

Proteins from a 1531 medical text hint at Renaissance hair cures and odd remedies

A proteomics analysis of Bartholomäus Vogtherr’s 1531 medical manuals recovered 111 proteins from the pages, including traces that could match plants (beech, watercress, rosemary) and animals (lizard, tortoise shell, hippopotamus). Notably, protein near hair-growth recipes suggests readers experimented with lizard heads for hair loss and hippo-derived ingredients for dental/mouth issues, illustrating how Renaissance readers tested unconventional cures and shedding light on early modern household science, per a study in the American Historical Review.

Innovative Study Promises Advances in Diabetes Detection and Management
health10 months ago

Innovative Study Promises Advances in Diabetes Detection and Management

A groundbreaking study reveals that insulin resistance and type 2 diabetes are more complex than previously thought, with individual molecular signatures in muscle tissue influencing insulin sensitivity. This research paves the way for personalized diagnosis and treatment, moving beyond traditional blood tests to early detection through muscle protein analysis, potentially transforming diabetes management worldwide.